IL_7MDZ_126
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MDZ_126 not in the Motif Atlas
- Homologous match to IL_8C3A_109
- Geometric discrepancy: 0.2657
- The information below is about IL_8C3A_109
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7MDZ|1|5|U|4295
7MDZ|1|5|U|4296
7MDZ|1|5|G|4297
7MDZ|1|5|A|4298
*
7MDZ|1|5|U|4312
7MDZ|1|5|A|4313
7MDZ|1|5|C|4314
7MDZ|1|5|A|4315
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain Q
- Ribosomal protein L18
- Chain T
- eL21
- Chain b
- 60S ribosomal protein L29
- Chain o
- eL42
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