IL_7MDZ_145

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

7MDZ|1|5|U|4634, 7MDZ|1|5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_145 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2447

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7MDZ|1|5|U|4632
7MDZ|1|5|G|4633
7MDZ|1|5|U|4634
7MDZ|1|5|A|4635
7MDZ|1|5|U|4636
7MDZ|1|5|G|4637
*
7MDZ|1|5|C|4662
7MDZ|1|5|G|4663
7MDZ|1|5|A|4664
7MDZ|1|5|A|4665
7MDZ|1|5|G|4666

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain W

60S ribosomal protein L24

Chain d

eL31