IL_7MDZ_148
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUUAU*AGAAUC
- Length
- 12 nucleotides
- Bulged bases
- 7MDZ|1|5|A|4708
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MDZ_148 not in the Motif Atlas
- Geometric match to IL_5J7L_350
- Geometric discrepancy: 0.2253
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7MDZ|1|5|G|4680
7MDZ|1|5|A|4681
7MDZ|1|5|U|4682
7MDZ|1|5|U|4683
7MDZ|1|5|A|4684
7MDZ|1|5|U|4685
*
7MDZ|1|5|A|4705
7MDZ|1|5|G|4706
7MDZ|1|5|A|4707
7MDZ|1|5|A|4708
7MDZ|1|5|U|4709
7MDZ|1|5|C|4710
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9
- Chain O
- uL13
- Chain m
- eL40
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