IL_7MDZ_152

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_152 not in the Motif Atlas

Geometric match to IL_2OE8_002

Geometric discrepancy: 0.3088

The information below is about IL_2OE8_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

7MDZ|1|5|G|4769
7MDZ|1|5|U|4770
7MDZ|1|5|C|4771
7MDZ|1|5|C|4772
7MDZ|1|5|C|4773
*
7MDZ|1|5|G|4862
7MDZ|1|5|G|4863
7MDZ|1|5|U|4864
7MDZ|1|5|C|4865

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

uL13