IL_7MDZ_162

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_162 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.1854

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7MDZ|1|5|A|5014
7MDZ|1|5|G|5015
7MDZ|1|5|A|5016
7MDZ|1|5|G|5017
*
7MDZ|1|5|C|5032
7MDZ|1|5|G|5033
7MDZ|1|5|A|5034
7MDZ|1|5|U|5035

Current chains

Chain 5

28S rRNA

Nearby chains

Chain II

eS8

Chain R

Ribosomal protein L19