IL_7MDZ_166

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUCUC*GAUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_166 not in the Motif Atlas

Geometric match to IL_4V9F_104

Geometric discrepancy: 0.1521

The information below is about IL_4V9F_104

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.11

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

9

Unit IDs

7MDZ|1|7|A|32
7MDZ|1|7|U|33
7MDZ|1|7|C|34
7MDZ|1|7|U|35
7MDZ|1|7|C|36
*
7MDZ|1|7|G|41
7MDZ|1|7|A|42
7MDZ|1|7|U|43
7MDZ|1|7|C|44
7MDZ|1|7|U|45

Current chains

Chain 7

5S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain D

Ribosomal_L18_c domain-containing protein

Chain J

60S ribosomal protein L11