IL_7MDZ_170

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

7MDZ|1|8|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_170 not in the Motif Atlas

Homologous match to IL_5TBW_145

Geometric discrepancy: 0.2296

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7MDZ|1|8|U|64
7MDZ|1|8|A|65
7MDZ|1|8|A|66
*
7MDZ|1|8|U|92
7MDZ|1|8|C|93
7MDZ|1|8|G|94
7MDZ|1|8|A|95

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain Y

uL24

Chain h

eL35

Chain j

Ribosomal protein L37