IL_7MDZ_185

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_185 not in the Motif Atlas

Homologous match to IL_4V88_395

Geometric discrepancy: 0.2487

The information below is about IL_4V88_395

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

7MDZ|1|9|U|152
7MDZ|1|9|G|153
7MDZ|1|9|U|154
*
7MDZ|1|9|A|164
7MDZ|1|9|G|165
7MDZ|1|9|A|166

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain YY

40S ribosomal protein S24