IL_7MDZ_193

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

7MDZ|1|9|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_193 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1846

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7MDZ|1|9|G|411
7MDZ|1|9|G|412
7MDZ|1|9|G|413
*
7MDZ|1|9|C|424
7MDZ|1|9|G|425
7MDZ|1|9|A|426
7MDZ|1|9|U|427
7MDZ|1|9|U|428
7MDZ|1|9|C|429

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain JJ

uS4

Chain XX

uS12