IL_7MDZ_205

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_205 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1618

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7MDZ|1|9|C|663
7MDZ|1|9|A|664
7MDZ|1|9|G|665
*
7MDZ|1|9|C|1162
7MDZ|1|9|C|1163
7MDZ|1|9|G|1164

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

uS5

Chain XX

uS12