IL_7MDZ_209

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_209 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.37

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7MDZ|1|9|G|692
7MDZ|1|9|A|693
7MDZ|1|9|G|694
7MDZ|1|9|C|695
*
7MDZ|1|9|G|731
7MDZ|1|9|U|732
7MDZ|1|9|C|733
7MDZ|1|9|C|734

Current chains

Chain 9

18S rRNA

Nearby chains

Chain HH

eS7

Chain WW

uS8