3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAAAAAAUU*ACCGCAGC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MDZ_214 not in the Motif Atlas
Geometric match to IL_4V88_425
Geometric discrepancy: 0.2587
The information below is about IL_4V88_425
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53064.1
Basepair signature
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

7MDZ|1|9|G|807
7MDZ|1|9|A|808
7MDZ|1|9|A|809
7MDZ|1|9|A|810
7MDZ|1|9|A|811
7MDZ|1|9|A|812
7MDZ|1|9|A|813
7MDZ|1|9|U|814
7MDZ|1|9|U|815
*
7MDZ|1|9|A|849
7MDZ|1|9|C|850
7MDZ|1|9|C|851
7MDZ|1|9|G|852
7MDZ|1|9|C|853
7MDZ|1|9|A|854
7MDZ|1|9|G|855
7MDZ|1|9|C|856

Current chains

Chain 9
18S rRNA

Nearby chains

Chain EE
40S ribosomal protein S4
Chain JJ
uS4
Chain LL
uS17
Chain WW
uS8

Coloring options:


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