IL_7MDZ_218

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

7MDZ|1|9|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_218 not in the Motif Atlas

Geometric match to IL_3SJ2_002

Geometric discrepancy: 0.2425

The information below is about IL_3SJ2_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

7MDZ|1|9|G|925
7MDZ|1|9|A|926
7MDZ|1|9|C|927
*
7MDZ|1|9|G|1014
7MDZ|1|9|U|1015
7MDZ|1|9|U|1016
7MDZ|1|9|U|1017

Current chains

Chain 9

18S rRNA

Nearby chains

Chain NN

uS15

Chain bb

eS27