3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCUAG*CUUGGACC
Length
13 nucleotides
Bulged bases
7MDZ|1|9|G|970
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MDZ_222 not in the Motif Atlas
Homologous match to IL_4V88_434
Geometric discrepancy: 0.1847
The information below is about IL_4V88_434
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

7MDZ|1|9|G|952
7MDZ|1|9|C|953
7MDZ|1|9|U|954
7MDZ|1|9|A|955
7MDZ|1|9|G|956
*
7MDZ|1|9|C|967
7MDZ|1|9|U|968
7MDZ|1|9|U|969
7MDZ|1|9|G|970
7MDZ|1|9|G|971
7MDZ|1|9|A|972
7MDZ|1|9|C|973
7MDZ|1|9|C|974

Current chains

Chain 9
18S rRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain BB
eS1
Chain OO
uS11

Coloring options:


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