IL_7MDZ_229
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MDZ_229 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.0954
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7MDZ|1|9|G|1168
7MDZ|1|9|G|1169
7MDZ|1|9|A|1170
7MDZ|1|9|G|1171
7MDZ|1|9|U|1172
7MDZ|1|9|A|1173
7MDZ|1|9|U|1174
7MDZ|1|9|G|1175
*
7MDZ|1|9|U|1186
7MDZ|1|9|G|1187
7MDZ|1|9|A|1188
7MDZ|1|9|A|1189
7MDZ|1|9|A|1190
7MDZ|1|9|C|1191
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain XX
- uS12
- Chain n
- 60s ribosomal protein l41
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