IL_7MDZ_236
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 7MDZ|1|9|G|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MDZ_236 not in the Motif Atlas
- Homologous match to IL_4V88_447
- Geometric discrepancy: 0.3737
- The information below is about IL_4V88_447
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_34780.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7MDZ|1|9|G|1281
7MDZ|1|9|A|1282
7MDZ|1|9|C|1283
7MDZ|1|9|A|1284
7MDZ|1|9|G|1285
7MDZ|1|9|G|1286
7MDZ|1|9|A|1287
7MDZ|1|9|U|1288
7MDZ|1|9|U|1289
7MDZ|1|9|G|1290
*
7MDZ|1|9|C|1309
7MDZ|1|9|U|1310
7MDZ|1|9|C|1311
7MDZ|1|9|G|1312
7MDZ|1|9|A|1313
7MDZ|1|9|U|1314
7MDZ|1|9|U|1315
7MDZ|1|9|C|1316
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain KK
- S10_plectin domain-containing protein
- Chain MM
- eS12
- Chain dd
- eS29
- Chain ff
- eS31
Coloring options: