IL_7MDZ_237

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACAG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_237 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.3876

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

7MDZ|1|9|A|1291
7MDZ|1|9|C|1292
7MDZ|1|9|A|1293
7MDZ|1|9|G|1294
*
7MDZ|1|9|C|1305
7MDZ|1|9|U|1306
7MDZ|1|9|U|1307
7MDZ|1|9|U|1308

Current chains

Chain 9

18S rRNA

Nearby chains

Chain PP

uS19

Chain dd

eS29

Chain ff

eS31