3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGCAU*AUG
Length
8 nucleotides
Bulged bases
7MDZ|1|9|C|1331
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MDZ_239 not in the Motif Atlas
Geometric match to IL_4LFB_044
Geometric discrepancy: 0.1716
The information below is about IL_4LFB_044
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_76319.5
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
3

Unit IDs

7MDZ|1|9|U|1329
7MDZ|1|9|G|1330
7MDZ|1|9|C|1331
7MDZ|1|9|A|1332
7MDZ|1|9|U|1333
*
7MDZ|1|9|A|1498
7MDZ|1|9|U|1499
7MDZ|1|9|G|1500

Current chains

Chain 9
18S rRNA

Nearby chains

Chain 6
mRNA
Chain DD
Ribosomal protein S3
Chain KK
S10_plectin domain-containing protein
Chain UU
uS10
Chain dd
eS29

Coloring options:


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