IL_7MDZ_241

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7MDZ|1|9|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_241 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.2469

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7MDZ|1|9|C|1337
7MDZ|1|9|G|1338
*
7MDZ|1|9|C|1488
7MDZ|1|9|A|1489
7MDZ|1|9|G|1490

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 6

mRNA

Chain CC

uS5

Chain DD

Ribosomal protein S3

Chain QQ

uS9

Chain UU

uS10

Chain dd

eS29