IL_7MDZ_251

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7MDZ|1|9|C|1701, 7MDZ|1|9|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_251 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1782

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7MDZ|1|9|C|1700
7MDZ|1|9|C|1701
7MDZ|1|9|G|1702
*
7MDZ|1|9|C|1833
7MDZ|1|9|A|1834
7MDZ|1|9|A|1835
7MDZ|1|9|G|1836

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain 6

mRNA

Chain aa

40S ribosomal protein S26