IL_7MDZ_261

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_261 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1855

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7MDZ|1|9|C|1742
7MDZ|1|9|G|1743
7MDZ|1|9|G|1744
7MDZ|1|9|A|1745
7MDZ|1|9|U|1746
*
7MDZ|1|9|A|1788
7MDZ|1|9|G|1789
7MDZ|1|9|A|1790
7MDZ|1|9|A|1791
7MDZ|1|9|G|1792

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain II

eS8

Chain W

60S ribosomal protein L24