IL_7MDZ_263

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCC*GGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_263 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3737

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

7MDZ|1|9|C|1751
7MDZ|1|9|C|1752
7MDZ|1|9|C|1753
*
7MDZ|1|9|G|1779
7MDZ|1|9|G|1780
7MDZ|1|9|A|1781
7MDZ|1|9|G|1782

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6