IL_7MDZ_264
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAU*AAAUGUG
- Length
- 12 nucleotides
- Bulged bases
- 7MDZ|1|5|G|119, 7MDZ|1|5|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MDZ_264 not in the Motif Atlas
- Homologous match to IL_8GLP_287
- Geometric discrepancy: 0.121
- The information below is about IL_8GLP_287
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_65996.1
- Basepair signature
- cWW-L-cWW-L-tSH-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
7MDZ|1|5|C|118
7MDZ|1|5|G|119
7MDZ|1|5|A|120
7MDZ|1|5|A|121
7MDZ|1|5|U|122
*
7MDZ|1|5|A|147
7MDZ|1|5|A|148
7MDZ|1|5|A|149
7MDZ|1|5|U|150
7MDZ|1|5|G|151
7MDZ|1|5|U|152
7MDZ|1|5|G|153
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L7a
- Chain N
- Ribosomal protein L15
- Chain h
- eL35
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