IL_7MDZ_265

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAC*GUCG

Length

7 nucleotides

Bulged bases

7MDZ|1|5|C|1210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_265 not in the Motif Atlas

Geometric match to IL_8C3A_427

Geometric discrepancy: 0.2071

The information below is about IL_8C3A_427

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

7MDZ|1|5|C|1086
7MDZ|1|5|A|1087
7MDZ|1|5|C|1088
*
7MDZ|1|5|G|1208
7MDZ|1|5|U|1209
7MDZ|1|5|C|1210
7MDZ|1|5|G|1211

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L7

Chain T

eL21