IL_7MDZ_267

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_267 not in the Motif Atlas

Homologous match to IL_8C3A_481

Geometric discrepancy: 0.1091

The information below is about IL_8C3A_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7MDZ|1|5|A|1746
7MDZ|1|5|U|1747
7MDZ|1|5|U|1748
7MDZ|1|5|A|1749
*
7MDZ|1|5|U|1781
7MDZ|1|5|U|1782
7MDZ|1|5|C|1783
7MDZ|1|5|U|1784

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

Ribosomal_L18_c domain-containing protein

Chain I

60S ribosomal protein L10