IL_7MDZ_271

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

7MDZ|1|5|A|3746, 7MDZ|1|5|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_271 not in the Motif Atlas

Homologous match to IL_8P9A_313

Geometric discrepancy: 0.1799

The information below is about IL_8P9A_313

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

7MDZ|1|5|U|3704
7MDZ|1|5|G|3705
*
7MDZ|1|5|U|3745
7MDZ|1|5|A|3746
7MDZ|1|5|A|3747
7MDZ|1|5|A|3748

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

Ribosomal protein L8