IL_7MDZ_279

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCG*UGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_279 not in the Motif Atlas

Geometric match to IL_8C3A_444

Geometric discrepancy: 0.3127

The information below is about IL_8C3A_444

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

7MDZ|1|9|C|877
7MDZ|1|9|G|878
7MDZ|1|9|C|879
7MDZ|1|9|G|880
*
7MDZ|1|9|U|906
7MDZ|1|9|G|907
7MDZ|1|9|A|908
7MDZ|1|9|G|909

Current chains

Chain 9

18S rRNA

Nearby chains

Chain R

Ribosomal protein L19