IL_7MPI_006

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

7MPI|1|A1|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_006 not in the Motif Atlas

Homologous match to IL_8C3A_007

Geometric discrepancy: 0.0672

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7MPI|1|A1|A|123
7MPI|1|A1|U|124
*
7MPI|1|A1|A|144
7MPI|1|A1|G|145
7MPI|1|A1|U|146
7MPI|1|A1|U|147
7MPI|1|A1|G|148
7MPI|1|A1|U|149

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AG

60S ribosomal protein L8-A

Chain AN

60S ribosomal protein L15-A