IL_7MPI_026

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

7MPI|1|A1|U|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_026 not in the Motif Atlas

Geometric match to IL_7PMQ_002

Geometric discrepancy: 0.3576

The information below is about IL_7PMQ_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

7MPI|1|A1|A|755
7MPI|1|A1|U|756
*
7MPI|1|A1|A|775
7MPI|1|A1|U|776
7MPI|1|A1|U|777

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AQ

60S ribosomal protein L18-A

Chain Ab

60S ribosomal protein L29