IL_7MPI_030

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

7MPI|1|A1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_030 not in the Motif Atlas

Geometric match to IL_4V9F_025

Geometric discrepancy: 0.1078

The information below is about IL_4V9F_025

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

7MPI|1|A1|A|828
7MPI|1|A1|U|829
*
7MPI|1|A1|A|895
7MPI|1|A1|A|896
7MPI|1|A1|U|897

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain Ag

60S ribosomal protein L34-A

Chain Ap

60S ribosomal protein L43-A