IL_7MPI_044

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_044 not in the Motif Atlas

Homologous match to IL_8C3A_047

Geometric discrepancy: 0.1166

The information below is about IL_8C3A_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7MPI|1|A1|C|1069
7MPI|1|A1|U|1070
7MPI|1|A1|U|1071
*
7MPI|1|A1|G|1087
7MPI|1|A1|U|1088
7MPI|1|A1|G|1089

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AT

60S ribosomal protein L21-A

Chain Ab

60S ribosomal protein L29