3D structure

PDB id
7MPI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from cbf5-D95A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.05 Å

Loop

Sequence
UUG*C(A2M)G
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPI_047 not in the Motif Atlas
Homologous match to IL_8C3A_050
Geometric discrepancy: 0.5652
The information below is about IL_8C3A_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_52767.5
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

7MPI|1|A1|U|1124
7MPI|1|A1|U|1125
7MPI|1|A1|G|1126
*
7MPI|1|A1|C|1132
7MPI|1|A1|A2M|1133
7MPI|1|A1|G|1134

Current chains

Chain A1
25S rRNA

Nearby chains

Chain A3
5S ribosomal RNA; 5S rRNA
Chain AI
60S ribosomal protein L10
Chain AT
60S ribosomal protein L21-A
Chain Ab
60S ribosomal protein L29

Coloring options:


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