IL_7MPI_083

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_083 not in the Motif Atlas

Homologous match to IL_8C3A_089

Geometric discrepancy: 0.1437

The information below is about IL_8C3A_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7MPI|1|A1|C|2196
7MPI|1|A1|OMC|2197
7MPI|1|A1|A|2198
7MPI|1|A1|G|2199
*
7MPI|1|A1|C|2245
7MPI|1|A1|G|2246

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA