IL_7MPI_088

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_088 not in the Motif Atlas

Homologous match to IL_8C3A_094

Geometric discrepancy: 0.0657

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

7MPI|1|A1|G|2276
7MPI|1|A1|C|2277
*
7MPI|1|A1|G|2307
7MPI|1|A1|C|2308
7MPI|1|A1|A|2309
7MPI|1|A1|U|2310

Current chains

Chain A1

25S rRNA

Nearby chains

Chain An

60S ribosomal protein L41-A