IL_7MPI_101

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_101 not in the Motif Atlas

Homologous match to IL_8C3A_110

Geometric discrepancy: 0.1511

The information below is about IL_8C3A_110

Detailed Annotation

Single stack bend with bulge

Broad Annotation

Single stack bend with bulge

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7MPI|1|A1|G|2770
7MPI|1|A1|U|2771
7MPI|1|A1|C|2772
7MPI|1|A1|C|2773
*
7MPI|1|A1|G|2787
7MPI|1|A1|C|2788

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L13-A

Chain AQ

60S ribosomal protein L18-A

Chain Aa

60S ribosomal protein L28

Chain Ao

60S ribosomal protein L42-A