IL_7MPI_178

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7MPI|1|B5|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_178 not in the Motif Atlas

Geometric match to IL_5TBW_146

Geometric discrepancy: 0.3067

The information below is about IL_5TBW_146

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7MPI|1|B5|G|557
7MPI|1|B5|U|558
7MPI|1|B5|C|559
*
7MPI|1|B5|G|586
7MPI|1|B5|C|587

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

40S ribosomal protein S3

Chain Be

40S ribosomal protein S30-A

Chain Bh

Suppressor protein STM1