IL_7MPI_179

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

G(OMG)UGCCAG*CGG(OMU)AAUUCC

Length

18 nucleotides

Bulged bases

7MPI|1|B5|A|579, 7MPI|1|B5|U|581

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPI|1|B5|G|561
7MPI|1|B5|OMG|562
7MPI|1|B5|U|563
7MPI|1|B5|G|564
7MPI|1|B5|C|565
7MPI|1|B5|C|566
7MPI|1|B5|A|567
7MPI|1|B5|G|568
*
7MPI|1|B5|C|575
7MPI|1|B5|G|576
7MPI|1|B5|G|577
7MPI|1|B5|OMU|578
7MPI|1|B5|A|579
7MPI|1|B5|A|580
7MPI|1|B5|U|581
7MPI|1|B5|U|582
7MPI|1|B5|C|583
7MPI|1|B5|C|584

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

40S ribosomal protein S3

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A

Chain Bh

Suppressor protein STM1