IL_7MPI_189

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_189 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.0996

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

7MPI|1|B5|A|865
7MPI|1|B5|G|866
*
7MPI|1|B5|C|962
7MPI|1|B5|A|963
7MPI|1|B5|U|964
7MPI|1|B5|U|965

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BN

40S ribosomal protein S13

Chain BW

40S ribosomal protein S22-A

Chain Bb

40S ribosomal protein S27-A