IL_7MPI_194

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

7MPI|1|B5|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_194 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.192

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

7MPI|1|B5|U|893
7MPI|1|B5|U|894
7MPI|1|B5|G|895
7MPI|1|B5|U|896
7MPI|1|B5|C|897
7MPI|1|B5|A|898
7MPI|1|B5|G|899
*
7MPI|1|B5|C|910
7MPI|1|B5|U|911
7MPI|1|B5|U|912
7MPI|1|B5|G|913
7MPI|1|B5|G|914
7MPI|1|B5|A|915
7MPI|1|B5|U|916
7MPI|1|B5|U|917
7MPI|1|B5|U|918
7MPI|1|B5|A|919

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BB

40S ribosomal protein S1-A

Chain BO

40S ribosomal protein S14-A