IL_7MPI_222

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_222 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1083

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7MPI|1|B5|G|1540
7MPI|1|B5|G|1541
7MPI|1|B5|G|1542
7MPI|1|B5|A|1543
7MPI|1|B5|U|1544
7MPI|1|B5|A|1545
*
7MPI|1|B5|U|1566
7MPI|1|B5|U|1567
7MPI|1|B5|C|1568
7MPI|1|B5|A|1569
7MPI|1|B5|A|1570
7MPI|1|B5|C|1571

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BS

40S ribosomal protein S18-A

Chain BT

40S ribosomal protein S19-A