3D structure

PDB id
7MPI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from cbf5-D95A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.05 Å

Loop

Sequence
GGAA*U(OMC)
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPI_240 not in the Motif Atlas
Geometric match to IL_5TBW_076
Geometric discrepancy: 0.0714
The information below is about IL_5TBW_076
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.4
Basepair signature
cWW-cWW-tSH-cWW-R
Number of instances in this motif group
28

Unit IDs

7MPI|1|A1|G|1898
7MPI|1|A1|G|1899
7MPI|1|A1|A|1900
7MPI|1|A1|A|1901
*
7MPI|1|A1|U|2336
7MPI|1|A1|OMC|2337

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AB
60S ribosomal protein L3
Chain AV
60S ribosomal protein L23-A

Coloring options:


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