IL_7MPI_241

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_241 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.065

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

7MPI|1|A1|G|1898
7MPI|1|A1|G|1899
7MPI|1|A1|A|1900
7MPI|1|A1|A|1901
7MPI|1|A1|G|1902
7MPI|1|A1|U|1903
7MPI|1|A1|C|1904
7MPI|1|A1|G|1905
7MPI|1|A1|G|1906
*
7MPI|1|A1|C|2333
7MPI|1|A1|U|2334
7MPI|1|A1|G|2335
7MPI|1|A1|U|2336
7MPI|1|A1|OMC|2337

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AV

60S ribosomal protein L23-A