IL_7MPI_247

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAU*(A2M)AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_247 not in the Motif Atlas

Homologous match to IL_8C3A_414

Geometric discrepancy: 0.1455

The information below is about IL_8C3A_414

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

7MPI|1|B5|C|411
7MPI|1|B5|A|412
7MPI|1|B5|U|413
*
7MPI|1|B5|A2M|420
7MPI|1|B5|A|421
7MPI|1|B5|G|422

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AV

60S ribosomal protein L23-A

Chain BG

40S ribosomal protein S6-A