IL_7MPI_250

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GCUAACCUUGAGUCC*GCUCUUGGCGAAC

Length

28 nucleotides

Bulged bases

7MPI|1|B5|A|707, 7MPI|1|B5|U|711, 7MPI|1|B5|U|715, 7MPI|1|B5|C|716, 7MPI|1|B5|C|724, 7MPI|1|B5|U|728, 7MPI|1|B5|G|729, 7MPI|1|B5|C|731, 7MPI|1|B5|G|732, 7MPI|1|B5|A|733

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPI|1|B5|G|703
7MPI|1|B5|C|704
7MPI|1|B5|U|705
7MPI|1|B5|A|706
7MPI|1|B5|A|707
7MPI|1|B5|C|708
7MPI|1|B5|C|709
7MPI|1|B5|U|710
7MPI|1|B5|U|711
7MPI|1|B5|G|712
7MPI|1|B5|A|713
7MPI|1|B5|G|714
7MPI|1|B5|U|715
7MPI|1|B5|C|716
7MPI|1|B5|C|717
*
7MPI|1|B5|G|723
7MPI|1|B5|C|724
7MPI|1|B5|U|725
7MPI|1|B5|C|726
7MPI|1|B5|U|727
7MPI|1|B5|U|728
7MPI|1|B5|G|729
7MPI|1|B5|G|730
7MPI|1|B5|C|731
7MPI|1|B5|G|732
7MPI|1|B5|A|733
7MPI|1|B5|A|734
7MPI|1|B5|C|735

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A