IL_7MPI_252

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

7MPI|1|B5|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_252 not in the Motif Atlas

Geometric match to IL_2OIU_003

Geometric discrepancy: 0.3461

The information below is about IL_2OIU_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7MPI|1|B5|G|868
7MPI|1|B5|A|869
*
7MPI|1|B5|U|958
7MPI|1|B5|U|959
7MPI|1|B5|U|960

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BN

40S ribosomal protein S13

Chain BW

40S ribosomal protein S22-A

Chain Bb

40S ribosomal protein S27-A