3D structure

PDB id
7MPI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from cbf5-D95A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.05 Å

Loop

Sequence
GA*UUU
Length
5 nucleotides
Bulged bases
7MPI|1|B5|U|959
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPI_252 not in the Motif Atlas
Geometric match to IL_2OIU_003
Geometric discrepancy: 0.3461
The information below is about IL_2OIU_003
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

7MPI|1|B5|G|868
7MPI|1|B5|A|869
*
7MPI|1|B5|U|958
7MPI|1|B5|U|959
7MPI|1|B5|U|960

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BN
40S ribosomal protein S13
Chain BW
40S ribosomal protein S22-A
Chain Bb
40S ribosomal protein S27-A

Coloring options:


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