IL_7MPI_258

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_258 not in the Motif Atlas

Homologous match to IL_8CRE_428

Geometric discrepancy: 0.0803

The information below is about IL_8CRE_428

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

7MPI|1|B5|A|746
7MPI|1|B5|C|747
*
7MPI|1|B5|G|802
7MPI|1|B5|A|803
7MPI|1|B5|A|804
7MPI|1|B5|U|805

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BH

40S ribosomal protein S7-A

Chain BL

40S ribosomal protein S11-A

Chain BW

40S ribosomal protein S22-A

Chain BX

40S ribosomal protein S23-A