3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GGGG*UGCAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_024 not in the Motif Atlas
Homologous match to IL_8C3A_025
Geometric discrepancy: 0.069
The information below is about IL_8C3A_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07235.3
Basepair signature
cWW-tSH-L-tHS-cWW
Number of instances in this motif group
8

Unit IDs

7MPJ|1|A1|G|725
7MPJ|1|A1|G|726
7MPJ|1|A1|G|727
7MPJ|1|A1|G|728
*
7MPJ|1|A1|U|741
7MPJ|1|A1|G|742
7MPJ|1|A1|C|743
7MPJ|1|A1|A|744
7MPJ|1|A1|C|745

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AQ
60S ribosomal protein L18-A
Chain Ab
60S ribosomal protein L29

Coloring options:


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