IL_7MPJ_041
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCGAA(PSU)G*CAAAC
- Length
- 12 nucleotides
- Bulged bases
- 7MPJ|1|A1|G|1001
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MPJ_041 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.2647
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06691.1
- Basepair signature
- cWW-cWS-L-R-L-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7MPJ|1|A1|G|999
7MPJ|1|A1|C|1000
7MPJ|1|A1|G|1001
7MPJ|1|A1|A|1002
7MPJ|1|A1|A|1003
7MPJ|1|A1|PSU|1004
7MPJ|1|A1|G|1005
*
7MPJ|1|A1|C|1045
7MPJ|1|A1|A|1046
7MPJ|1|A1|A|1047
7MPJ|1|A1|A|1048
7MPJ|1|A1|C|1049
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- 60S ribosomal protein L5
- Chain AI
- 60S ribosomal protein L10
- Chain AT
- 60S ribosomal protein L21-A
Coloring options: