IL_7MPJ_042

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUA*U(PSU)CU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_042 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.2192

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7MPJ|1|A1|A|1006
7MPJ|1|A1|U|1007
7MPJ|1|A1|U|1008
7MPJ|1|A1|A|1009
*
7MPJ|1|A1|U|1041
7MPJ|1|A1|PSU|1042
7MPJ|1|A1|C|1043
7MPJ|1|A1|U|1044

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AD

60S ribosomal protein L5

Chain AI

60S ribosomal protein L10