IL_7MPJ_051
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 7MPJ|1|A1|C|1196, 7MPJ|1|A1|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MPJ_051 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0801
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7MPJ|1|A1|G|1194
7MPJ|1|A1|A|1195
7MPJ|1|A1|C|1196
7MPJ|1|A1|A|1197
7MPJ|1|A1|C|1198
7MPJ|1|A1|C|1199
7MPJ|1|A1|A|1200
7MPJ|1|A1|C|1201
7MPJ|1|A1|A|1202
7MPJ|1|A1|A|1203
7MPJ|1|A1|A|1204
7MPJ|1|A1|A|1205
*
7MPJ|1|A1|U|1299
7MPJ|1|A1|G|1300
7MPJ|1|A1|A|1301
7MPJ|1|A1|A|1302
7MPJ|1|A1|A|1303
7MPJ|1|A1|A|1304
7MPJ|1|A1|U|1305
7MPJ|1|A1|G|1306
7MPJ|1|A1|G|1307
7MPJ|1|A1|A|1308
7MPJ|1|A1|U|1309
7MPJ|1|A1|G|1310
7MPJ|1|A1|G|1311
7MPJ|1|A1|C|1312
7MPJ|1|A1|G|1313
7MPJ|1|A1|C|1314
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AB
- 60S ribosomal protein L3
- Chain AF
- 60S ribosomal protein L7-A
- Chain AI
- 60S ribosomal protein L10
- Chain AO
- 60S ribosomal protein L16-A
- Chain Af
- 60S ribosomal protein L33-A
- Chain Am
- 60S ribosomal protein L40-A
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